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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1760481_1761531_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1760481 - 1761531
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGATG
5'SS Class:
major
3'SS Sequence:
CCTCCTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
GTATCCACACCT
Flanking Amino Acid:
KEERYDLKTKVSCLETVWVS
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
66.9
44.1
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
80.9
0.7
0.7
72.4
32.3
Minor 5ss
34.2
-1.8
3.5
47.9
47.8
Minor BPS
48
-0
2.1
71.43
44.6

Associated Gene:

Gene:
DHX30
Ensembl Gene ID:
ENSAPLG00000015682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016419
1742829 - 1763102
20274