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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1761739_1762122_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1761739 - 1762122
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCACA
5'SS Class:
major
3'SS Sequence:
TTGTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTTCCCCCCACT
Flanking Amino Acid:
QAKIHMPEKTAVEFLSKALD
Intron Amino Acid Position:
728

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
65.7
40.1
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
78.8
0.65
1
72.9
42.2
Minor 5ss
41.9
-0.9
2.8
55.8
42.2
Minor BPS
46
-0.2
2.3
70.61
45.8

Associated Gene:

Gene:
DHX30
Ensembl Gene ID:
ENSAPLG00000015682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016419
1742829 - 1763102
20274