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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17619615_17632990_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17619615 - 17632990
Intron Length:
13376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TCTGTAGTCACC
Flanking Amino Acid:
GLRPNLLPEFRGVVKVDINL
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
60.8
44.4
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
28.4
-2.5
3.5
38
46.9
Minor BPS
39.5
-0.8
2.5
54.01
44.3

Associated Gene:

Gene:
GPR158
Ensembl Gene ID:
ENSAPLG00000005836
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006040
17445114 - 17634124
189011