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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17674820_17675634_R

Intron Information:

Intron Rank:
133673
Intron Class:
major
Intron Phase:
Intron Coordinates:
17674820 - 17675634
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
TGATGCATCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
CCATTGTGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
62
38.8
Major BPS
79.4
0.73
1
80.1
32
Major PPT
67.2
0.39
1
62.9
42.7
Minor 5ss
28.5
-2.5
3
28
36.3
Minor BPS
43
-0.6
2.1
43.83
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019177
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035773
17674661 - 17682630
7970