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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17678524_17679287_R

Intron Information:

Intron Rank:
133675
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
17678524 - 17679287
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATTTTT
5'SS Class:
major
3'SS Sequence:
GGCATGGCACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTTTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
80.7
34.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
48.5
-0
1
36.3
40.4
Minor 5ss
45.8
-0.4
2.8
59.1
45.4
Minor BPS
65
0.55
2
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019177
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035773
17674661 - 17682630
7970