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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17694692_17697743_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17694692 - 17697743
Intron Length:
3052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTAACATCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TATTGTTTAACA
Flanking Amino Acid:
RLQEPPARPPRYISTFRPSV
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
61.8
0.27
1.1
60.8
38.9
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
71.2
0.66
1.7
80.29
35.7

Associated Gene:

Gene:
ENKUR
Ensembl Gene ID:
ENSAPLG00000009270
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009649
17694615 - 17707770
13156