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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17701318_17703450_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17701318 - 17703450
Intron Length:
2133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGAACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TCTTCTTGAACT
Flanking Amino Acid:
GLVPKYIKKKDYGITPKYVT
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
69.4
0.44
0.9
59.3
41.7
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
76.6
0.91
1.3
88.65
36.4

Associated Gene:

Gene:
ENKUR
Ensembl Gene ID:
ENSAPLG00000009270
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009649
17694615 - 17707770
13156