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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17703598_17707596_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17703598 - 17707596
Intron Length:
3999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATATT
5'SS Class:
strong_major
3'SS Sequence:
CTGATGGCACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATGT
Flanking Amino Acid:
SDEERENLLQGLKKNWEEVH
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
84.4
33.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
52.5
0.06
1
44.1
42.3
Minor 5ss
39.9
-1.1
3.2
59.8
44.7
Minor BPS
53.1
0.17
2.1
79.56
42.7

Associated Gene:

Gene:
ENKUR
Ensembl Gene ID:
ENSAPLG00000009270
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009649
17694615 - 17707770
13156