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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17717757_17721553_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17717757 - 17721553
Intron Length:
3797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATGCG
5'SS Class:
major
3'SS Sequence:
ATTTAATACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTATTTAATA
Flanking Amino Acid:
ERGGGGRGVVISDNWPGYSL
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
64.8
39.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.5
0.46
1
67.5
42.1
Minor 5ss
32.5
-2
3.2
38
42.1
Minor BPS
71.1
0.66
1.4
77.47
33

Associated Gene:

Gene:
PRTFDC1
Ensembl Gene ID:
ENSAPLG00000009020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038981
17717700 - 17726059
8360
ENSAPLT00000028716
17717700 - 17762641
44942