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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17721661_17723391_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17721661 - 17723391
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATCCTTATTT
Flanking Amino Acid:
VLIPHGIIVDRTERLAKDIM
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.6
0.87
0.7
88.2
29.1
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
75.7
0.89
1.5
88.91
36

Associated Gene:

Gene:
PRTFDC1
Ensembl Gene ID:
ENSAPLG00000009020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036825
17721446 - 17762641
41196
ENSAPLT00000028716
17717700 - 17762641
44942
ENSAPLT00000009421
17721446 - 17759092
37647
ENSAPLT00000038981
17717700 - 17726059
8360