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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1772413_1773597_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1772413 - 1773597
Intron Length:
1185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTAACCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CTTTTCCTAACC
Flanking Amino Acid:
QSFETQIQETRE*
Intron Amino Acid Position:
2335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
68.4
0.42
0.8
63.4
31.6
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
68.5
0.56
1.7
78.54
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037024
1771950 - 1826066
54117