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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1773776_1775598_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1773776 - 1775598
Intron Length:
1823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
TCCTCCCCACCC
Flanking Amino Acid:
GHLPAGGTVKAEGSAEPGQL
Intron Amino Acid Position:
2276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
79.3
0.66
0.8
74
31.1
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
45.8
-0.3
2.1
59.17
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037024
1771950 - 1826066
54117
ENSAPLT00000024785
1771256 - 1826066
54811
ENSAPLT00000016657
1773282 - 1826066
52785
ENSAPLT00000043162
1772287 - 1826066
53780