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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17758446_17758860_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17758446 - 17758860
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTAATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
KYKPKMIKVASLLVKRTSRP
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.5
0.75
0.8
77.5
34.5
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
PRTFDC1
Ensembl Gene ID:
ENSAPLG00000009020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036825
17721446 - 17762641
41196
ENSAPLT00000028716
17717700 - 17762641
44942
ENSAPLT00000009421
17721446 - 17759092
37647