About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1777076_1781627_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1777076 - 1781627
Intron Length:
4552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTGTGCTGATCT
Flanking Amino Acid:
NIKHVPGGGNVQIQNKKVDL
Intron Amino Acid Position:
2211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
84
0.77
0.7
82
30
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
51.2
0.12
2.2
76.69
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016657
1773282 - 1826066
52785
ENSAPLT00000040753
1771256 - 1826066
54811
ENSAPLT00000043162
1772287 - 1826066
53780
ENSAPLT00000037024
1771950 - 1826066
54117
ENSAPLT00000024785
1771256 - 1826066
54811
ENSAPLT00000043047
1771256 - 1826066
54811
ENSAPLT00000017725
1771256 - 1826066
54811
ENSAPLT00000042487
1771256 - 1826066
54811