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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1777076_1783382_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1777076 - 1783382
Intron Length:
6307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTGTGCTGATCT
Flanking Amino Acid:
EGAPKQPNGKVQIQNKKVDL
Intron Amino Acid Position:
2180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
83
23.9
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
84
0.77
0.7
82
30
Minor 5ss
40
-1.1
2.9
49.4
41.3
Minor BPS
51.2
0.12
2.2
76.69
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034979
1771256 - 1826066
54811