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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1781721_1783382_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1781721 - 1783382
Intron Length:
1662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTAACATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CATTCTGTAACA
Flanking Amino Acid:
EGAPKQPNGKVQIVSKKANY
Intron Amino Acid Position:
2180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
83
23.9
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
66.4
0.37
1
56.1
44.1
Minor 5ss
40
-1.1
2.9
49.4
41.3
Minor BPS
60.2
0.32
2
71.96
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016657
1773282 - 1826066
52785
ENSAPLT00000042487
1771256 - 1826066
54811
ENSAPLT00000040753
1771256 - 1826066
54811
ENSAPLT00000037024
1771950 - 1826066
54117
ENSAPLT00000043162
1772287 - 1826066
53780
ENSAPLT00000024785
1771256 - 1826066
54811
ENSAPLT00000043047
1771256 - 1826066
54811