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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1781721_1785709_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1781721 - 1785709
Intron Length:
3989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTAACATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CATTCTGTAACA
Flanking Amino Acid:
NIKHQPGGGKVQIVSKKANY
Intron Amino Acid Position:
2137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
66.4
0.37
1
56.1
44.1
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
60.2
0.32
2
71.96
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017725
1771256 - 1826066
54811