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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1783512_1785709_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1783512 - 1785709
Intron Length:
2198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTGTCTCCATCT
Flanking Amino Acid:
NIKHQPGGGKGKVEKKPESA
Intron Amino Acid Position:
2137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
71.6
0.54
1
72
33.1
Major PPT
71.2
0.48
0.9
63.3
38.5
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
47.7
-0.1
2.1
72.77
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024785
1771256 - 1826066
54811
ENSAPLT00000042487
1771256 - 1826066
54811
ENSAPLT00000016657
1773282 - 1826066
52785
ENSAPLT00000040753
1771256 - 1826066
54811
ENSAPLT00000037024
1771950 - 1826066
54117
ENSAPLT00000043162
1772287 - 1826066
53780
ENSAPLT00000034979
1771256 - 1826066
54811
ENSAPLT00000043047
1771256 - 1826066
54811