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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17857347_17861246_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17857347 - 17861246
Intron Length:
3900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCATTC
5'SS Class:
major
3'SS Sequence:
TTTCCCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTTCCCTTTACA
Flanking Amino Acid:
GPAFEAGLCTGDRIIKVNGE
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.2
67.1
39.7
Major BPS
68
0.45
1
57.8
39
Major PPT
89.3
0.88
0.6
83.8
24.4
Minor 5ss
47
-0.3
3.1
68.2
42.8
Minor BPS
75.8
0.81
1.6
85.53
33

Associated Gene:

Gene:
ARHGAP21
Ensembl Gene ID:
ENSAPLG00000008113
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018448
17833307 - 17909533
76227
ENSAPLT00000008512
17833307 - 17909533
76227