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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17866607_17878475_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17866607 - 17878475
Intron Length:
11869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TACTACTTAATG
Flanking Amino Acid:
MPKDEDILQLAYSQDAYLKG
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
31.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.7
0.62
0.8
71.8
32.8
Minor 5ss
50.1
0.01
2.4
63.4
43.4
Minor BPS
65.2
0.34
1.6
65.54
42.3

Associated Gene:

Gene:
ARHGAP21
Ensembl Gene ID:
ENSAPLG00000008113
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018448
17833307 - 17909533
76227
ENSAPLT00000008512
17833307 - 17909533
76227