About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17879701_17899804_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17879701 - 17899804
Intron Length:
20104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTCTCATT
5'SS Class:
weak_major
3'SS Sequence:
ACATGGAGAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCAAAA
U12 Branch Point Sequence:
CCCACCAAAAGA
Flanking Amino Acid:
RRIGSRASLSGIPSIMRKTF
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53
0.07
1.2
59.6
44.6
Major BPS
48.7
-0
1
53.2
28.8
Major PPT
44.5
-0.3
1.2
34.7
38.3
Minor 5ss
40.8
-1
3.1
55.9
42.6
Minor BPS
39.7
-0.7
2.1
44.02
44.5

Associated Gene:

Gene:
ARHGAP21
Ensembl Gene ID:
ENSAPLG00000008113
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018448
17833307 - 17909533
76227