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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17880425_17895028_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17880425 - 17895028
Intron Length:
14604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTACCTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATATGTTAATT
Flanking Amino Acid:
GDSLASIPFIDEPTSPSIDH
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.7
29.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.4
0.59
0.8
70.5
35.4
Minor 5ss
34.5
-1.8
2.8
40.8
45.4
Minor BPS
52.7
0.16
2
71.83
39.3

Associated Gene:

Gene:
ARHGAP21
Ensembl Gene ID:
ENSAPLG00000008113
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045391
17878556 - 17905410
26855
ENSAPLT00000008512
17833307 - 17909533
76227