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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17895444_17895527_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17895444 - 17895527
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CTCACTTTAACA
Flanking Amino Acid:
GLDDYREEEKSSIKHVSSLK
Intron Amino Acid Position:
890

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
70.3
36.4
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
85.1
0.79
0.8
82.1
28.4
Minor 5ss
42
-0.9
2.7
51.3
39.7
Minor BPS
69.5
0.61
1.3
71.49
41.1

Associated Gene:

Gene:
ARHGAP21
Ensembl Gene ID:
ENSAPLG00000008113
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045391
17878556 - 17905410
26855
ENSAPLT00000008512
17833307 - 17909533
76227