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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17896319_17897114_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17896319 - 17897114
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTGTC
5'SS Class:
major
3'SS Sequence:
ATATATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
ACTTGCTTACTA
Flanking Amino Acid:
FRQLVTDKGKRVGGSIRPWK
Intron Amino Acid Position:
945

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
70.7
40.2
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
80.9
0.7
0.9
77.8
40.4
Minor 5ss
41.7
-0.9
3.4
61.2
43.7
Minor BPS
52
0.06
2
64.95
42.3

Associated Gene:

Gene:
ARHGAP21
Ensembl Gene ID:
ENSAPLG00000008113
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045391
17878556 - 17905410
26855
ENSAPLT00000008512
17833307 - 17909533
76227