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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17899906_17899999_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17899906 - 17899999
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGAAAG
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTATATAAAA
Flanking Amino Acid:
DDCPPAHTNKYIPLIVDICC
Intron Amino Acid Position:
1155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1
67.1
38.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
91.5
0.93
0.6
89.8
18.5
Minor 5ss
40.6
-1
2.8
48.9
41.4
Minor BPS
51.6
0.05
1.8
69.36
36.1

Associated Gene:

Gene:
ARHGAP21
Ensembl Gene ID:
ENSAPLG00000008113
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045391
17878556 - 17905410
26855
ENSAPLT00000018448
17833307 - 17909533
76227
ENSAPLT00000008512
17833307 - 17909533
76227