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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17900156_17900263_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17900156 - 17900263
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTACATGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTTCCTTCTACA
Flanking Amino Acid:
GMTDIDVHDDKWRDLNVISS
Intron Amino Acid Position:
1207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
83.8
34.5
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
68.6
0.42
1
66.3
39.6
Minor 5ss
42.6
-0.8
3.1
63.9
40.4
Minor BPS
55.8
0.17
1.9
73.32
38

Associated Gene:

Gene:
ARHGAP21
Ensembl Gene ID:
ENSAPLG00000008113
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045391
17878556 - 17905410
26855
ENSAPLT00000018448
17833307 - 17909533
76227
ENSAPLT00000008512
17833307 - 17909533
76227