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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17900343_17901353_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17900343 - 17901353
Intron Length:
1011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
GCTTTTTTAACA
Flanking Amino Acid:
RKLPEPLFTNDKYADFIDAN
Intron Amino Acid Position:
1233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.2
37.4
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
80.5
0.69
0.9
76.7
36.2
Minor 5ss
37
-1.5
3
50
46.3
Minor BPS
74.2
0.75
1.1
75.16
36.6

Associated Gene:

Gene:
ARHGAP21
Ensembl Gene ID:
ENSAPLG00000008113
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018448
17833307 - 17909533
76227
ENSAPLT00000008512
17833307 - 17909533
76227
ENSAPLT00000045391
17878556 - 17905410
26855