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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1790102_1791849_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1790102 - 1791849
Intron Length:
1748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CATCCATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
CTGGCTTTAACG
Flanking Amino Acid:
TLTTKEPKPKVTEAKSPEKR
Intron Amino Acid Position:
1951

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
77.5
0.62
0.9
73.5
35.6
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
63.5
0.28
1.6
62.35
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024687
1771256 - 1826066
54811
ENSAPLT00000040753
1771256 - 1826066
54811
ENSAPLT00000017725
1771256 - 1826066
54811
ENSAPLT00000037024
1771950 - 1826066
54117
ENSAPLT00000016657
1773282 - 1826066
52785
ENSAPLT00000034979
1771256 - 1826066
54811
ENSAPLT00000043047
1771256 - 1826066
54811
ENSAPLT00000024785
1771256 - 1826066
54811
ENSAPLT00000042487
1771256 - 1826066
54811