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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1790102_1792977_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1790102 - 1792977
Intron Length:
2876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
CATCCATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
CTGGCTTTAACG
Flanking Amino Acid:
LPPSPEKKTKVTEAKSPEKR
Intron Amino Acid Position:
1880

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
77.5
0.62
0.9
73.5
35.6
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
63.5
0.28
1.6
62.35
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043162
1772287 - 1826066
53780