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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17901603_17903806_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17901603 - 17903806
Intron Length:
2204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCAGAA
5'SS Class:
major
3'SS Sequence:
CTTCATTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AAATACTTCATT
Flanking Amino Acid:
TVAENSEKNKMEPRNLAIVF
Intron Amino Acid Position:
1288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
62.4
38.4
Major BPS
78.6
0.71
1
78.6
31
Major PPT
77.9
0.63
0.8
76.7
31.5
Minor 5ss
34.2
-1.8
3.6
47
48.4
Minor BPS
51.1
0.12
1.9
69.72
40.9

Associated Gene:

Gene:
ARHGAP21
Ensembl Gene ID:
ENSAPLG00000008113
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045391
17878556 - 17905410
26855
ENSAPLT00000018448
17833307 - 17909533
76227
ENSAPLT00000008512
17833307 - 17909533
76227