Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17904606_17905267_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17904606 - 17905267

Intron Length:

662

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTCTT

5'SS Class:

strong_major

3'SS Sequence:

GATGTTGTAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTTAT

U12 Branch Point Sequence:

ACTTACTGAAGC

Flanking Amino Acid:

RTGVSPGDVSGEVGGVYHTV

Intron Amino Acid Position:

1174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

1.1

81.8

38.5

Major BPS

75.1

0.62

65.6

Major PPT

64.5

0.33

1.1

58.2

46.1

Minor 5ss

45.7

-0.5

2.9

67.7

43.2

Minor BPS

49.6

-0

1.9

62.71

42.4

Associated Gene:

Gene:

ARHGAP21

Ensembl Gene ID:

ENSAPLG00000008113

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045391

17878556 - 17905410

26855