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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17915065_17915809_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17915065 - 17915809
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTTTTA
5'SS Class:
major
3'SS Sequence:
TCTTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CCGTCTTTATTT
Flanking Amino Acid:
KLQDPRQYRQANGSAKKAGG
Intron Amino Acid Position:
1159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
76.9
34.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.6
0.89
0.7
84.8
28.7
Minor 5ss
42.5
-0.8
3.1
58.1
46.4
Minor BPS
56.2
0.27
1.6
66.59
45.3

Associated Gene:

Gene:
KIAA1217
Ensembl Gene ID:
ENSAPLG00000007810
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008134
17914576 - 18092942
178367