Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17915933_17921474_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17915933 - 17921474

Intron Length:

5542

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACAAGT

5'SS Class:

major

3'SS Sequence:

CTCCTTTCCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCCT

U12 Branch Point Sequence:

TCTCCCCTCCCC

Flanking Amino Acid:

GTLMHHKEKKGPGAAPQTSR

Intron Amino Acid Position:

1118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

1.1

75.5

40.6

Major BPS

32.7

-1

4.2

38.9

Major PPT

80.2

0.68

0.7

75.8

26.2

Minor 5ss

40.7

-1

58.6

45.5

Minor BPS

36.6

-1

3.7

60.47

44.7

Associated Gene:

Gene:

KIAA1217

Ensembl Gene ID:

ENSAPLG00000007810

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008134

17914576 - 18092942

178367