About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1792063_1792977_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1792063 - 1792977
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
AAAAACCATAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAAAA
Flanking Amino Acid:
LPPSPEKKTKPAAATPSAKP
Intron Amino Acid Position:
1880

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
47.2
-0.1
1.1
39
38.1
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
65.1
0.47
1.5
77.07
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024785
1771256 - 1826066
54811
ENSAPLT00000042487
1771256 - 1826066
54811
ENSAPLT00000024687
1771256 - 1826066
54811
ENSAPLT00000040753
1771256 - 1826066
54811
ENSAPLT00000017725
1771256 - 1826066
54811
ENSAPLT00000037024
1771950 - 1826066
54117
ENSAPLT00000016657
1773282 - 1826066
52785
ENSAPLT00000034979
1771256 - 1826066
54811
ENSAPLT00000043047
1771256 - 1826066
54811