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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17926747_17932081_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17926747 - 17932081
Intron Length:
5335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CCCTGCTTACTT
Flanking Amino Acid:
GDTVEKPEVSEDVPDADQDN
Intron Amino Acid Position:
979

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
80.1
0.68
0.9
73.7
35.8
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
48
-0
2.1
62.41
48.4

Associated Gene:

Gene:
KIAA1217
Ensembl Gene ID:
ENSAPLG00000007810
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008134
17914576 - 18092942
178367