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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17933486_17935156_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17933486 - 17935156
Intron Length:
1671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCTGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TTGTGTTCAATT
Flanking Amino Acid:
SMTDILTMLRRHVTEGLLRG
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
85.8
25.2
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
65.4
0.35
1.1
61.7
44.4
Minor 5ss
40.8
-1
3
58.4
46.2
Minor BPS
54.6
0.22
2
75.51
42.1

Associated Gene:

Gene:
KIAA1217
Ensembl Gene ID:
ENSAPLG00000007810
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008134
17914576 - 18092942
178367