About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17935680_17943219_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17935680 - 17943219
Intron Length:
7540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTTGA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTGCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCCTTCTTACAT
Flanking Amino Acid:
NEEERIVKKLCELEGFVEDL
Intron Amino Acid Position:
681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
63.7
39
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.8
0.72
1
76.9
42.1
Minor 5ss
32.9
-2
3.1
37.1
42.6
Minor BPS
56.9
0.3
1.8
72.05
45.1

Associated Gene:

Gene:
KIAA1217
Ensembl Gene ID:
ENSAPLG00000007810
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008134
17914576 - 18092942
178367