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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17943396_17949680_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17943396 - 17949680
Intron Length:
6285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TTTTGTGCAACA
Flanking Amino Acid:
LQLHQMKQLQLQNQEMLRAM
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.2
37.7
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
74.5
0.55
1
70
40.3
Minor 5ss
46.4
-0.4
3.1
64.5
46.9
Minor BPS
47.1
-0.2
2.5
71.01
41.7

Associated Gene:

Gene:
KIAA1217
Ensembl Gene ID:
ENSAPLG00000007810
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008134
17914576 - 18092942
178367