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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17949842_17957014_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17949842 - 17957014
Intron Length:
7173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TGCTGTTTACTT
Flanking Amino Acid:
VSTKNSIDATGAANLSGGKN
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
84.1
0.77
0.8
78.1
35.3
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
48.9
-0
2
67.55
44.3

Associated Gene:

Gene:
KIAA1217
Ensembl Gene ID:
ENSAPLG00000007810
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008134
17914576 - 18092942
178367