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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17990414_17995902_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17990414 - 17995902
Intron Length:
5489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTCTTTTGATT
Flanking Amino Acid:
RNIYYELCDVRNIQDRSFLK
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.4
0.73
0.9
73.8
40.5
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
64.9
0.55
1.1
77.76
32.2

Associated Gene:

Gene:
KIAA1217
Ensembl Gene ID:
ENSAPLG00000007810
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008134
17914576 - 18092942
178367