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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1820059_1821222_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1820059 - 1821222
Intron Length:
1164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTACATTT
Flanking Amino Acid:
GKSPFHEPPAEAPASVQQEL
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
80.2
30.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
42
-0.9
3
55.3
48.9
Minor BPS
49.2
0.02
2
76.99
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043047
1771256 - 1826066
54811
ENSAPLT00000016657
1773282 - 1826066
52785
ENSAPLT00000034979
1771256 - 1826066
54811
ENSAPLT00000042487
1771256 - 1826066
54811
ENSAPLT00000024785
1771256 - 1826066
54811
ENSAPLT00000024687
1771256 - 1826066
54811
ENSAPLT00000040753
1771256 - 1826066
54811
ENSAPLT00000043162
1772287 - 1826066
53780
ENSAPLT00000017725
1771256 - 1826066
54811
ENSAPLT00000037024
1771950 - 1826066
54117