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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1821841_1823324_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1821841 - 1823324
Intron Length:
1484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TGTTTTTCCGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TTTTTGTTGATT
Flanking Amino Acid:
ATDASKGDTSADAQCVPASD
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
80.8
0.69
0.7
77.5
31.2
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
63.3
0.5
2
86.06
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024785
1771256 - 1826066
54811
ENSAPLT00000043047
1771256 - 1826066
54811
ENSAPLT00000024687
1771256 - 1826066
54811
ENSAPLT00000042487
1771256 - 1826066
54811
ENSAPLT00000017725
1771256 - 1826066
54811
ENSAPLT00000037024
1771950 - 1826066
54117
ENSAPLT00000016657
1773282 - 1826066
52785
ENSAPLT00000034979
1771256 - 1826066
54811
ENSAPLT00000043162
1772287 - 1826066
53780