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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1823466_1824796_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1823466 - 1824796
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTGCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
GAGTGCTTAATC
Flanking Amino Acid:
PDASFFVEPSVPPTVTEAKK
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
75.6
0.58
1
68.7
42
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
59.2
0.27
1.8
64.15
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024785
1771256 - 1826066
54811
ENSAPLT00000043047
1771256 - 1826066
54811
ENSAPLT00000024687
1771256 - 1826066
54811
ENSAPLT00000042487
1771256 - 1826066
54811
ENSAPLT00000017725
1771256 - 1826066
54811
ENSAPLT00000037024
1771950 - 1826066
54117
ENSAPLT00000016657
1773282 - 1826066
52785
ENSAPLT00000034979
1771256 - 1826066
54811
ENSAPLT00000043162
1772287 - 1826066
53780