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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1824872_1825467_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1824872 - 1825467
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTAAAT
U12 Branch Point Sequence:
TTCTCTGTTAGT
Flanking Amino Acid:
SAAEFLQDNAVPEEHWMGAQ
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
61
0.27
1.1
67.3
35.2
Major PPT
85.3
0.79
0.7
81.6
30.4
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
45.7
-0.2
2.5
71.14
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024687
1771256 - 1826066
54811
ENSAPLT00000040753
1771256 - 1826066
54811
ENSAPLT00000043162
1772287 - 1826066
53780
ENSAPLT00000017725
1771256 - 1826066
54811
ENSAPLT00000037024
1771950 - 1826066
54117
ENSAPLT00000043047
1771256 - 1826066
54811
ENSAPLT00000016657
1773282 - 1826066
52785
ENSAPLT00000034979
1771256 - 1826066
54811
ENSAPLT00000024785
1771256 - 1826066
54811
ENSAPLT00000042487
1771256 - 1826066
54811