About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18322783_18327055_R

Intron Information:

Intron Rank:
150040
Intron Class:
major
Intron Phase:
Intron Coordinates:
18322783 - 18327055
Intron Length:
4273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTACCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTGTCTTTTACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
74.2
0.6
1
67
39.4
Major PPT
85.2
0.79
0.8
79.8
31.9
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
70.3
0.62
1.6
78.32
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028292
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025327
18322363 - 18342447
20085
ENSAPLT00000023184
18302522 - 18327910
25389
ENSAPLT00000040407
18322363 - 18327910
5548
ENSAPLT00000037348
18322363 - 18327910
5548