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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18329570_18342366_R

Intron Information:

Intron Rank:
150043
Intron Class:
major
Intron Phase:
Intron Coordinates:
18329570 - 18342366
Intron Length:
12797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGAAT
5'SS Class:
major
3'SS Sequence:
CACTCTCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
CCTTTTGCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
73.1
37.3
Major BPS
68
0.45
1
57.8
39
Major PPT
78.2
0.63
0.8
69
36.7
Minor 5ss
40.2
-1.1
3.2
53.5
45
Minor BPS
39.9
-0.7
2.4
58.3
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028292
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025327
18322363 - 18342447
20085