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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18329716_18346201_F

Intron Information:

Intron Rank:
136373
Intron Class:
major
Intron Phase:
Intron Coordinates:
18329716 - 18346201
Intron Length:
16486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTC
5'SS Class:
major
3'SS Sequence:
CTTTTATCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCTTTTATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.7
39.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
86.7
0.83
0.7
81.5
29.2
Minor 5ss
44.9
-0.5
2.8
62
42.6
Minor BPS
66.4
0.5
1.5
74.93
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023486
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024764
18323134 - 18346604
23471