Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18352333_18355392_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18352333 - 18355392

Intron Length:

3060

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CTCCTGCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCGCCAT

U12 Branch Point Sequence:

GCAGCGCCATGC

Flanking Amino Acid:

MTFQVMPAASPAGP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.8

80.6

31.9

Major BPS

42.8

-0.4

1.5

46.1

46.9

Major PPT

75.6

0.58

0.8

68.9

31.6

Minor 5ss

41.4

-1

3.1

45.7

Minor BPS

26.1

-1.8

2.2

28.36

35.6

Associated Gene:

Gene:

OTUD1

Ensembl Gene ID:

ENSAPLG00000026401

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025313

18351325 - 18355404

4080