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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18366496_18369358_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18366496 - 18369358
Intron Length:
2863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
CTTCTTGTAATA
Flanking Amino Acid:
ALAILRGNIEKYYNINIEDT
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
72.5
0.51
0.9
69.2
35.7
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
49.1
-0
2
63.33
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022206
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020885
18362838 - 18404634
41797