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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_18369509_18377013_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18369509 - 18377013
Intron Length:
7505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGCAATCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
GATTCCTTACTT
Flanking Amino Acid:
ECQEKGRAKMVVFEDDDHEK
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75.9
34
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
69.9
0.45
0.9
66.2
40.4
Minor 5ss
49.1
-0.1
2.4
64.8
41.7
Minor BPS
70.2
0.71
1.6
82.01
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022206
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020885
18362838 - 18404634
41797